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Computational redesign of endonuclease DNA binding and cleavage specificity

Submitted by Anonymous on Fri, 2010-11-12 04:39
Authors: 
Ashworth, J., Havranek, J. J., Duarte, C. M., Sussman, D., Monnat, R. J., Jr., Stoddard, B. L. and Baker, D.
Volume: 
441
Link to Article: 
http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citati...
Year: 
2006
Reference: 
Nature
Pages: 
656-659
Lab: 
Baker
Publication Type: 
Method
Publication Subject: 
Other Rosetta Papers

Improved beta-protein structure prediction by multilevel optimization of nonlocal strand pairings and local backbone conformation

Submitted by Anonymous on Fri, 2010-11-12 04:39
Authors: 
Bradley, P. and Baker, D.
Volume: 
65
Link to Article: 
http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citati...
Year: 
2006
Reference: 
Proteins
Pages: 
922-929
Lab: 
Baker
Publication Type: 
Method
Publication Subject: 
Other Rosetta Papers

Homology modeling using parametric alignment ensemble generation with consensus and energy-based model selection

Submitted by Anonymous on Fri, 2010-11-12 04:39
Authors: 
Chivian, D. and Baker, D.
Volume: 
34
Link to Article: 
http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citati...
Year: 
2006
Reference: 
Nucleic Acids Res
Pages: 
e112
Lab: 
Baker
Publication Type: 
Method
Publication Subject: 
Other Rosetta Papers

Computational design of a new hydrogen bond network and at least a 300-fold specificity switch at a protein-protein interface

Submitted by Anonymous on Fri, 2010-11-12 04:39
Authors: 
Joachimiak, L. A., Kortemme, T., Stoddard, B. L. and Baker, D.
Volume: 
361
Link to Article: 
http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citati...
Year: 
2006
Reference: 
J Mol Biol
Pages: 
195-208
Lab: 
Baker
Publication Type: 
Method
Publication Subject: 
Other Rosetta Papers

Physically realistic homology models built with ROSETTA can be more accurate than their templates

Submitted by Anonymous on Fri, 2010-11-12 04:39
Authors: 
Misura, K. M., Chivian, D., Rohl, C. A., Kim, D. E. and Baker, D.
Volume: 
103
Link to Article: 
http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citati...
Year: 
2006
Reference: 
Proc Natl Acad Sci U S A
Pages: 
5361-5366
Lab: 
Baker
Publication Type: 
Method
Publication Subject: 
Other Rosetta Papers

New algorithms and an in silico benchmark for computational enzyme design

Submitted by Anonymous on Fri, 2010-11-12 04:39
Authors: 
Zanghellini, A., Jiang, L., Wollacott, A. M., Cheng, G., Meiler, J., Althoff, E. A., Rothlisberger, D. and Baker, D.
Volume: 
15
Link to Article: 
http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citati...
Year: 
2006
Reference: 
Protein Sci
Pages: 
2785-2794
Lab: 
Baker
Publication Type: 
Method
Publication Subject: 
Other Rosetta Papers

Structure-based protocol for identifying mutations that enhance protein-protein binding affinities

Submitted by Anonymous on Fri, 2010-11-12 04:39
Authors: 
Sammond, D. W., Eletr, Z. M., Purbeck, C., Kimple, R. J., Siderovski, D. P. and Kuhlman, B.
Volume: 
371
Link to Article: 
http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citati...
Year: 
2007
Reference: 
J Mol Biol
Pages: 
1392-1404
Lab: 
Kuhlman
Publication Type: 
Method
Publication Subject: 
Other Rosetta Papers

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