Method

RosettaDock in CAPRI rounds 6-12

Submitted by Anonymous on Fri, 2010-11-12 04:39

Authors:

Wang, C., Schueler-Furman, O., Andre, I., London, N., Fleishman, S. J., Bradley, P., Qian, B. and Baker, D.

Volume:

Link to Article:

http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citati...

Year:

2007

Reference:

Proteins

Pages:

758-763

Lab:

Baker

Publication Type:

Method

Publication Subject:

Other Rosetta Papers

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Prediction of structures of multidomain proteins from structures of the individual domains

Submitted by Anonymous on Fri, 2010-11-12 04:39

Authors:

Wollacott, A. M., Zanghellini, A., Murphy, P. and Baker, D.

Volume:

Link to Article:

http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citati...

Year:

2007

Reference:

Protein Sci

Pages:

165-175

Lab:

Baker

Publication Type:

Method

Publication Subject:

Other Rosetta Papers

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De novo high-resolution protein structure determination from sparse spin-labeling EPR data

Submitted by Anonymous on Fri, 2010-11-12 04:39

Authors:

Alexander, N., Bortolus, M., Al-Mestarihi, A., McHaourab, H. and Meiler, J.

Volume:

Link to Article:

http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citati...

Year:

2008

Reference:

Structure

Pages:

181-195

Lab:

Meiler

Publication Type:

Method

Publication Subject:

Other Rosetta Papers

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BCL::Align-sequence alignment and fold recognition with a custom scoring function online

Submitted by Anonymous on Fri, 2010-11-12 04:39

Authors:

Dong, E., Smith, J., Heinze, S., Alexander, N. and Meiler, J.

Volume:

422

Link to Article:

http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citati...

Year:

2008

Reference:

Gene

Pages:

41-46

Lab:

Meiler

Publication Type:

Method

Publication Subject:

Other Rosetta Papers

Read more about BCL::Align-sequence alignment and fold recognition with a custom scoring function online

Using quantum mechanics to improve estimates of amino acid side chain rotamer energies

Submitted by Anonymous on Fri, 2010-11-12 04:39

Authors:

Renfrew, P. D., Butterfoss, G. L. and Kuhlman, B.

Volume:

Link to Article:

http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citati...

Year:

2008

Reference:

Proteins

Pages:

1637-1646

Lab:

Kuhlman

Publication Type:

Method

Publication Subject:

Other Rosetta Papers

Read more about Using quantum mechanics to improve estimates of amino acid side chain rotamer energies

A simple model of backbone flexibility improves modeling of side-chain conformational variability

Submitted by Anonymous on Fri, 2010-11-12 04:39

Authors:

Friedland, G. D., Linares, A. J., Smith, C. A. and Kortemme, T.

Volume:

380

Link to Article:

http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citati...

Year:

2008

Reference:

J Mol Biol

Pages:

757-774

Lab:

Kortemme

Publication Type:

Method

Publication Subject:

Other Rosetta Papers

Read more about A simple model of backbone flexibility improves modeling of side-chain conformational variability

Prediction of protein-protein interface sequence diversity using flexible backbone computational protein design

Submitted by Anonymous on Fri, 2010-11-12 04:39

Authors:

Humphris, E. L. and Kortemme, T.

Volume:

Link to Article:

http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citati...

Year:

2008

Reference:

Structure

Pages:

1777-1788

Lab:

Kortemme

Publication Type:

Method

Publication Subject:

Other Rosetta Papers

Read more about Prediction of protein-protein interface sequence diversity using flexible backbone computational protein design

Backrub-like backbone simulation recapitulates natural protein conformational variability and improves mutant side-chain prediction

Submitted by Anonymous on Fri, 2010-11-12 04:39

Authors:

Smith, C. A. and Kortemme, T.

Volume:

380

Link to Article:

http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citati...

Year:

2008

Reference:

J Mol Biol

Pages:

742-756

Lab:

Kortemme

Publication Type:

Method

Publication Subject:

Other Rosetta Papers

Read more about Backrub-like backbone simulation recapitulates natural protein conformational variability and improves mutant side-chain prediction

Structure prediction of domain insertion proteins from structures of individual domains

Submitted by Anonymous on Fri, 2010-11-12 04:39

Authors:

Berrondo, M., Ostermeier, M. and Gray, J. J.

Volume:

Link to Article:

http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citati...

Year:

2008

Reference:

Structure

Pages:

513-527

Lab:

Gray

Publication Type:

Method

Publication Subject:

Other Rosetta Papers

Read more about Structure prediction of domain insertion proteins from structures of individual domains

Conformer selection and induced fit in flexible backbone protein-protein docking using computational and NMR ensembles

Submitted by Anonymous on Fri, 2010-11-12 04:39

Authors:

Chaudhury, S. and Gray, J. J.

Volume:

381

Link to Article:

http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citati...

Year:

2008

Reference:

J Mol Biol

Pages:

1068-1087

Lab:

Gray

Publication Type:

Method

Publication Subject:

Other Rosetta Papers

Read more about Conformer selection and induced fit in flexible backbone protein-protein docking using computational and NMR ensembles

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