Method

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Read more about Solution- and adsorbed-state structural ensembles predicted for the statherin-hydroxyapatite system

RosettaAntibody: antibody variable region homology modeling server

Submitted by Anonymous on Fri, 2010-11-12 04:39

Authors:

Sircar, A., Kim, E. T. and Gray, J. J.

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Year:

2009

Reference:

Nucleic Acids Res

Pages:

W474-479

Lab:

Gray

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Toward high-resolution homology modeling of antibody Fv regions and application to antibody-antigen docking

Submitted by Anonymous on Fri, 2010-11-12 04:39

Authors:

Sivasubramanian, A., Sircar, A., Chaudhury, S. and Gray, J. J.

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Year:

2009

Reference:

Proteins

Pages:

497-514

Lab:

Gray

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Assessment of the optimization of affinity and specificity at protein-DNA interfaces

Submitted by Anonymous on Fri, 2010-11-12 04:39

Authors:

Ashworth, J. and Baker, D.

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Year:

2009

Reference:

Nucleic Acids Res

Pages:

e73

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Prediction of membrane protein structures with complex topologies using limited constraints

Submitted by Anonymous on Fri, 2010-11-12 04:39

Authors:

Barth, P., Wallner, B. and Baker, D.

Volume:

106

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Year:

2009

Reference:

Proc Natl Acad Sci U S A

Pages:

1409-1414

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Simultaneous prediction of protein folding and docking at high resolution

Submitted by Anonymous on Fri, 2010-11-12 04:39

Authors:

Das, R., Andre, I., Shen, Y., Wu, Y., Lemak, A., Bansal, S., Arrowsmith, C. H., Szyperski, T. and Baker, D.

Volume:

106

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Year:

2009

Reference:

Proc Natl Acad Sci U S A

Pages:

18978-18983

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RosettaLigand docking with full ligand and receptor flexibility

Submitted by Anonymous on Fri, 2010-11-12 04:39

Authors:

Davis, I. W. and Baker, D.

Volume:

385

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Year:

2009

Reference:

J Mol Biol

Pages:

381-392

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Blind docking of pharmaceutically relevant compounds using RosettaLigand

Submitted by Anonymous on Fri, 2010-11-12 04:39

Authors:

Davis, I. W., Raha, K., Head, M. S. and Baker, D.

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Year:

2009

Reference:

Protein Sci

Pages:

1998-2002

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Refinement of protein structures into low-resolution density maps using rosetta

Submitted by Anonymous on Fri, 2010-11-12 04:39

Authors:

DiMaio, F., Tyka, M. D., Baker, M. L., Chiu, W. and Baker, D.

Volume:

392

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Year:

2009

Reference:

J Mol Biol

Pages:

181-190

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Motif-directed flexible backbone design of functional interactions

Submitted by Anonymous on Fri, 2010-11-12 04:39

Authors:

Havranek, J. J. and Baker, D.

Volume:

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Year:

2009

Reference:

Protein Sci

Pages:

1293-1305

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