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Alteration of enzyme specificity by computational loop remodeling and design

Submitted by Anonymous on Fri, 2010-11-12 04:39
Authors: 
Murphy, P. M., Bolduc, J. M., Gallaher, J. L., Stoddard, B. L. and Baker, D.
Volume: 
106
Link to Article: 
http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citati...
Year: 
2009
Reference: 
Proc Natl Acad Sci U S A
Pages: 
9215-9220
Lab: 
Baker
Publication Type: 
Method
Publication Subject: 
Other Rosetta Papers

Structure prediction for CASP8 with all-atom refinement using Rosetta

Submitted by Anonymous on Fri, 2010-11-12 04:39
Authors: 
Raman, S., Vernon, R., Thompson, J., Tyka, M., Sadreyev, R., Pei, J., Kim, D., Kellogg, E., DiMaio, F., Lange, O., Kinch, L., Sheffler, W., Kim, B. H., Das, R., Grishin, N. V. and Baker, D.
Volume: 
77 Suppl 9
Link to Article: 
http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citati...
Year: 
2009
Reference: 
Proteins
Pages: 
89-99
Lab: 
Baker
Publication Type: 
Method
Publication Subject: 
Other Rosetta Papers

RosettaHoles: rapid assessment of protein core packing for structure prediction, refinement, design, and validation

Submitted by Anonymous on Fri, 2010-11-12 04:39
Authors: 
Sheffler, W. and Baker, D.
Volume: 
18
Link to Article: 
http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citati...
Year: 
2009
Reference: 
Protein Sci
Pages: 
229-239
Lab: 
Baker
Publication Type: 
Method
Publication Subject: 
Other Rosetta Papers

BCL::contact-low confidence fold recognition hits boost protein contact prediction and de novo structure determination

Submitted by Anonymous on Fri, 2010-11-12 04:39
Authors: 
Karakas, M., Woetzel, N. and Meiler, J.
Volume: 
17
Link to Article: 
http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citati...
Year: 
2010
Reference: 
J Comput Biol
Pages: 
153-168
Lab: 
Meiler
Publication Type: 
Method
Publication Subject: 
Other Rosetta Papers

SnugDock: paratope structural optimization during antibody-antigen docking compensates for errors in antibody homology models

Submitted by Anonymous on Fri, 2010-11-12 04:39
Authors: 
Sircar, A. and Gray, J. J.
Volume: 
6
Link to Article: 
http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citati...
Year: 
2010
Reference: 
PLoS Comput Biol
Pages: 
e1000644
Lab: 
Gray
Publication Type: 
Method
Publication Subject: 
Other Rosetta Papers

Sub-angstrom modeling of complexes between flexible peptides and globular proteins

Submitted by Anonymous on Fri, 2010-11-12 04:39
Authors: 
Raveh, B., London, N., Schueler-Furman, O.
Volume: 
78
Link to Article: 
http://www3.interscience.wiley.com/journal/123324632/abstract?CRETRY=1&SRETRY=0
Year: 
2010
Reference: 
Proteins
Pages: 
2029-2040
Lab: 
Furman
Publication Type: 
Method
Publication Subject: 
Other Rosetta Papers

Accurate automated protein NMR structure determination using unassigned NOESY data

Submitted by Anonymous on Fri, 2010-11-12 04:39
Authors: 
Raman, S., Huang, Y. J., Mao, B., Rossi, P., Aramini, J. M., Liu, G., Montelione, G. T. and Baker, D.
Volume: 
132
Link to Article: 
http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citati...
Year: 
2010
Reference: 
J Am Chem Soc
Pages: 
202-207
Lab: 
Baker
Publication Type: 
Method
Publication Subject: 
Other Rosetta Papers

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