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Method

Funnel hunting in a rough terrain: learning and discriminating native energy funnels

Submitted by Anonymous on Fri, 2010-11-12 04:39
Authors: 
London, N. and Schueler-Furman, O.
Volume: 
16
Link to Article: 
http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citati...
Year: 
2008
Reference: 
Structure
Pages: 
269-279
Lab: 
Furman
Publication Type: 
Method
Publication Subject: 
Other Rosetta Papers

Solvent accessible surface area approximations for rapid and accurate protein structure prediction

Submitted by Anonymous on Fri, 2010-11-12 04:39
Authors: 
Durham, E., Dorr, B., Woetzel, N., Staritzbichler, R. and Meiler, J.
Volume: 
15
Link to Article: 
http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citati...
Year: 
2009
Reference: 
J Mol Model
Pages: 
1093-1108
Lab: 
Meiler
Publication Type: 
Method
Publication Subject: 
Other Rosetta Papers

PyRosetta: a script-based interface for implementing molecular modeling algorithms using Rosetta

Submitted by Anonymous on Fri, 2010-11-12 04:39
Authors: 
Chaudhury, S., Lyskov, S. and Gray, J. J.
Volume: 
26
Link to Article: 
http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citati...
Year: 
2010
Reference: 
Bioinformatics
Pages: 
689-691
Lab: 
Gray
Publication Type: 
Method
Publication Subject: 
Other Rosetta Papers

A unified hydrophobicity scale for multispan membrane proteins

Submitted by Anonymous on Fri, 2010-11-12 04:39
Authors: 
Koehler, J., Woetzel, N., Staritzbichler, R., Sanders, C. R. and Meiler, J.
Volume: 
76
Link to Article: 
http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citati...
Year: 
2009
Reference: 
Proteins
Pages: 
13-29
Lab: 
Meiler
Publication Type: 
Method
Publication Subject: 
Other Rosetta Papers

EM-fold: De novo folding of alpha-helical proteins guided by intermediate-resolution electron microscopy density maps

Submitted by Anonymous on Fri, 2010-11-12 04:39
Authors: 
Lindert, S., Staritzbichler, R., Wotzel, N., Karakas, M., Stewart, P. L. and Meiler, J.
Volume: 
17
Link to Article: 
http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citati...
Year: 
2009
Reference: 
Structure
Pages: 
990-1003
Lab: 
Meiler
Publication Type: 
Method
Publication Subject: 
Other Rosetta Papers

Multi-constraint computational design suggests that native sequences of germline antibody H3 loops are nearly optimal for conformational flexibility

Submitted by Anonymous on Fri, 2010-11-12 04:39
Authors: 
Babor, M. and Kortemme, T.
Volume: 
75
Link to Article: 
http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citati...
Year: 
2009
Reference: 
Proteins
Pages: 
846-858
Lab: 
Kortemme
Publication Type: 
Method
Publication Subject: 
Other Rosetta Papers

A correspondence between solution-state dynamics of an individual protein and the sequence and conformational diversity of its family

Submitted by Anonymous on Fri, 2010-11-12 04:39
Authors: 
Friedland, G. D., Lakomek, N. A., Griesinger, C., Meiler, J. and Kortemme, T.
Volume: 
5
Link to Article: 
http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citati...
Year: 
2009
Reference: 
PLoS Comput Biol
Pages: 
e1000393
Lab: 
Kortemme
Publication Type: 
Method
Publication Subject: 
Other Rosetta Papers

Sub-angstrom accuracy in protein loop reconstruction by robotics-inspired conformational sampling

Submitted by Anonymous on Fri, 2010-11-12 04:39
Authors: 
Mandell, D. J., Coutsias, E. A. and Kortemme, T.
Volume: 
6
Link to Article: 
http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citati...
Year: 
2009
Reference: 
Nat Methods
Pages: 
551-552
Lab: 
Kortemme
Publication Type: 
Method
Publication Subject: 
Other Rosetta Papers

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