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Method

Incorporating biochemical information and backbone flexibility in RosettaDock for CAPRI rounds 6-12

Submitted by Anonymous on Fri, 2010-11-12 04:39
Authors: 
Chaudhury, S., Sircar, A., Sivasubramanian, A., Berrondo, M. and Gray, J. J.
Volume: 
69
Link to Article: 
http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citati...
Year: 
2007
Reference: 
Proteins
Pages: 
793-800
Lab: 
Gray
Publication Type: 
Method
Publication Subject: 
Other Rosetta Papers

Structure prediction of protein-solid surface interactions reveals a molecular recognition motif of statherin for hydroxyapatite

Submitted by Anonymous on Fri, 2010-11-12 04:39
Authors: 
Makrodimitris, K., Masica, D. L., Kim, E. T. and Gray, J. J.
Volume: 
129
Link to Article: 
http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citati...
Year: 
2007
Reference: 
J Am Chem Soc
Pages: 
13713-13722
Lab: 
Gray
Publication Type: 
Method
Publication Subject: 
Other Rosetta Papers

Prediction of the structure of symmetrical protein assemblies

Submitted by Anonymous on Fri, 2010-11-12 04:39
Authors: 
Andre, I., Bradley, P., Wang, C. and Baker, D.
Volume: 
104
Link to Article: 
http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citati...
Year: 
2007
Reference: 
Proc Natl Acad Sci U S A
Pages: 
17656-17661
Lab: 
Baker
Publication Type: 
Method
Publication Subject: 
Other Rosetta Papers

Toward high-resolution prediction and design of transmembrane helical protein structures

Submitted by Anonymous on Fri, 2010-11-12 04:39
Authors: 
Barth, P., Schonbrun, J. and Baker, D.
Volume: 
104
Link to Article: 
http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citati...
Year: 
2007
Reference: 
Proc Natl Acad Sci U S A
Pages: 
15682-15687
Lab: 
Baker
Publication Type: 
Method
Publication Subject: 
Other Rosetta Papers

High-resolution structural and thermodynamic analysis of extreme stabilization of human procarboxypeptidase by computational protein design

Submitted by Anonymous on Fri, 2010-11-12 04:39
Authors: 
Dantas, G., Corrent, C., Reichow, S. L., Havranek, J. J., Eletr, Z. M., Isern, N. G., Kuhlman, B., Varani, G., Merritt, E. A. and Baker, D.
Volume: 
366
Link to Article: 
http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citati...
Year: 
2007
Reference: 
J Mol Biol
Pages: 
1209-1221
Lab: 
Baker
Publication Type: 
Method
Publication Subject: 
Other Rosetta Papers

Structure prediction for CASP7 targets using extensive all-atom refinement with Rosetta@home

Submitted by Anonymous on Fri, 2010-11-12 04:39
Authors: 
Das, R., Qian, B., Raman, S., Vernon, R., Thompson, J., Bradley, P., Khare, S., Tyka, M. D., Bhat, D., Chivian, D., Kim, D. E., Sheffler, W. H., Malmstrom, L., Wollacott, A. M., Wang, C., Andre, I. and Baker, D.
Volume: 
69 Suppl 8
Link to Article: 
http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citati...
Year: 
2007
Reference: 
Proteins
Pages: 
118-128
Lab: 
Baker
Publication Type: 
Method
Publication Subject: 
Other Rosetta Papers

High-resolution structure prediction and the crystallographic phase problem

Submitted by Anonymous on Fri, 2010-11-12 04:39
Authors: 
Qian, B., Raman, S., Das, R., Bradley, P., McCoy, A. J., Read, R. J. and Baker, D.
Volume: 
450
Link to Article: 
http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citati...
Year: 
2007
Reference: 
Nature
Pages: 
259-264
Lab: 
Baker
Publication Type: 
Method
Publication Subject: 
Other Rosetta Papers

Pages