Method

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Computational alanine scanning of protein-protein interfaces

Submitted by Anonymous on Fri, 2010-11-12 04:39

Authors:

Kortemme, T., Kim, D. E. and Baker, D.

Volume:

2004

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2004

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Sci STKE

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pl2

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Strand-loop-strand motifs: prediction of hairpins and diverging turns in proteins

Submitted by Anonymous on Fri, 2010-11-12 04:39

Authors:

Kuhn, M., Meiler, J. and Baker, D.

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Year:

2004

Reference:

Proteins

Pages:

282-288

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Analysis of anisotropic side-chain packing in proteins and application to high-resolution structure prediction

Submitted by Anonymous on Fri, 2010-11-12 04:39

Authors:

Misura, K. M., Morozov, A. V. and Baker, D.

Volume:

342

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Year:

2004

Reference:

J Mol Biol

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651-664

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Close agreement between the orientation dependence of hydrogen bonds observed in protein structures and quantum mechanical calculations

Submitted by Anonymous on Fri, 2010-11-12 04:39

Authors:

Morozov, A. V., Kortemme, T., Tsemekhman, K. and Baker, D.

Volume:

101

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Year:

2004

Reference:

Proc Natl Acad Sci U S A

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6946-6951

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Improvement of comparative model accuracy by free-energy optimization along principal components of natural structural variation

Submitted by Anonymous on Fri, 2010-11-12 04:39

Authors:

Qian, B., Ortiz, A. R. and Baker, D.

Volume:

101

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Year:

2004

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Proc Natl Acad Sci U S A

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15346-15351

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CASP6 assessment of contact prediction

Submitted by Anonymous on Fri, 2010-11-12 04:39

Authors:

Grana, O., Baker, D., MacCallum, R. M., Meiler, J., Punta, M., Rost, B., Tress, M. L. and Valencia, A.

Volume:

61 Suppl 7

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Year:

2005

Reference:

Proteins

Pages:

214-224

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Other Labs

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CAPRI rounds 3-5 reveal promising successes and future challenges for RosettaDock

Submitted by Anonymous on Fri, 2010-11-12 04:39

Authors:

Daily, M. D., Masica, D., Sivasubramanian, A., Somarouthu, S. and Gray, J. J.

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Year:

2005

Reference:

Proteins

Pages:

181-186

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Gray

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Free modeling with Rosetta in CASP6

Submitted by Anonymous on Fri, 2010-11-12 04:39

Authors:

Bradley, P., Malmstrom, L., Qian, B., Schonbrun, J., Chivian, D., Kim, D. E., Meiler, J., Misura, K. M. and Baker, D.

Volume:

61 Suppl 7

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Year:

2005

Reference:

Proteins

Pages:

128-134

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